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BROWN (B Locus Gene):
This coloration is often referred to as "Red". Genetically, this color is brown and is the homozygous recessive allelic pair, "b/b". If in fact it was a true red, then the allele would be non-extension "e".
The Brown Locus affects only eumelanin (affects only black/brown, not red/yellow). It is believed that the Brown Locus codes for an enzyme, tyrosinase- related protein 1 (TYRP1), which catalyzes the final step in eumelanin production, changing the final intermediate brown pigment (dihydroxyindole) to black pigment. SO, ALL dogs start as BROWN and after the final step --- this directs the color to be black.
When brown (b/b) is expressed, it means that the final step in eumelanin production has not been completed and the pigment remains brown. The brown color is not a genetic defect.
When the alleles are in the homozygous or heterozygous dominant form of B/B or B/b, the color and pigment (nose, eye rims and lips) remains (or directs the color to be) black.
When the alleles are in the homozygous recessive form (b/b), the color and pigment will be brown. This just means that the final step in eumelanin production of changing brown to black did not occur. Phaemelanin (yellow/red [e/e]) is not affected. BUT, in the e/e colored dog, if the dog is also b/b; they will be either red or yellow and will have brown pigment (nose, eye rims and lips). The pigment granules produced by "bb" are smaller, rounder in shape, and appear lighter than pigment granules in "B" dogs. The iris of the eye is also lightened to amber, gold, olive greenish-gold or an orange coloration.
Genes that code for color can easily be manipulated by the breeder to achieve a certain color, or breed a certain color out of the bloodline.
In order to produce the brown color: both parents could be the brown/chocolate color (b/b); or one of the parents must be the brown/chocolate color (b/b) -- with the other parent carrying the brown/chocolate allele (B/b); or both parents (which could be black in color) must be a carrier of the "B" gene in the heterozygous form (B/b).
RULES OF THUMB (when dealing with brown/chocolate colored dogs):
 | | If two brown dogs are mated, the resulting offspring can not be black.
|  | | If two brown dogs are mated, the resulting offspring can not be blue.
|  | | If two brown dogs are mated, and neither are carrying the dilution gene; | | | then the offspring will be all brown/chocolate.
|  | | If two brown dogs are mated, and one is carrying the dilution gene and the | | | other is not; then the offspring will be all brown/chocolate.
|  | | If two brown dogs are mated, and both are carrying the dilution gene; then | | | the offspring could be either brown or diluted brown (fawn).
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If you see a black puppy (with or without tan points and/or with or without white spotting) in a litter where both parents are brown/chocolate ---- then that puppy has a different sire. It is not genetically possible for two brown (b/b) dogs to produce black (B/B or B/b) offspring.
If you DO produce a black puppy from two brown parents, there is no need to panic. Contact Texas A&M College of Veterinary Medicine, Dr. Murphy's Lab and tell them you need to verify parentage of your litter. You will need to test the puppy in question, the dam and the suspected sire. If you have more than one male that is any color other than brown, it is advisable to send all of their samples in for testing. If you do not have any other males, other than the brown one, look for a hole in your fence. AND, if you sent your bitch off to be bred, I'd contact the breeder and mention this website.
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